initialize-tgMCAtlas-method: Construct a meta cell reference atlas
In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data
initialize,tgMCAtlas-method R Documentation
Construct a meta cell reference atlas
Description
Construct a meta cell reference atlas
Usage
## S4 method for signature 'tgMCAtlas'
initialize(.Object, mat_id, naming_type, mc_id, graph_id, gset_id, type_annot)
Arguments
mat_id
umi matrix of the reference
naming_type
gene naming type
mc_id
metacell object id
graph_id
KNN adjacencies for the atlas
gset_id
gene set id for defining features
type_annot
data frame with type_id, type_name, type_color fields
tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.
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| initialize,tgMCAtlas-method | R Documentation |
Construct a meta cell reference atlas
Description
Construct a meta cell reference atlas
Usage
## S4 method for signature 'tgMCAtlas'
initialize(.Object, mat_id, naming_type, mc_id, graph_id, gset_id, type_annot)
Arguments
mat_id |
umi matrix of the reference |
naming_type |
gene naming type |
mc_id |
metacell object id |
graph_id |
KNN adjacencies for the atlas |
gset_id |
gene set id for defining features |
type_annot |
data frame with type_id, type_name, type_color fields |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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