mcell_add_mars_facs_data: Creates a new matrix object from a given one by adding FACS...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Creates a new matrix object from a given one by adding FACS index sorting data to matrix metadata table

Description

#' @param mat_nm - the name of the new matrix in scdb

Usage

mcell_add_mars_facs_data(
  new_mat_id,
  mat_id,
  base_dir,
  amp_batch_ids = NULL,
  force = T
)

Arguments

new_mat_id	- id of the new matrix in scdb
mat_id	- id of the original matrix to add data to
base_dir	- directory where raw tab-delimited index-sort data files are located. Expecting file name to be <amp_batch_id>.txt with well names as row names and antibodies as column names
amp_batch_ids	- if not null, upload data from amp_batch_id specified here.
force	overwrite output matrix if it exist
dataset_table_fn	- path of the key table.

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.