mcell_add_cgraph_from_distmat: Build a cell graph using blanacing of an extrenal distance...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Build a cell graph using blanacing of an extrenal distance matrix

Description

Build a cell graph using blanacing of an extrenal distance matrix

Usage

mcell_add_cgraph_from_distmat(d_mat, graph_id, K, balance = F, k_expand = 10)

Arguments

d_mat	distance matrix, col and row names should be a super set of the non ignored cells for the matrix in mat_id
graph_id	new graph id to create
K	the guideline Knn parameter. The balanced will be constructed aiming at K edges per cell
balance	should balancing be performed (Default False)
k_expand	determine how much shoudl the K be expanded intially in order to find enough balanced neighbors.
mat_id	matrix object id

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.