mc_colorize_sup_hierarchy: colorize metacells using a set of super MCs derived by...
In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data
mc_colorize_sup_hierarchy R Documentation
colorize metacells using a set of super MCs derived by hclust, colored according to a user defined table
Description
colorize metacells using a set of super MCs derived by hclust, colored according to a user defined table
Usage
mc_colorize_sup_hierarchy(mc_id, supmc, supmc_key, gene_key = NULL)
Arguments
mc_id
metacell id in scdb
supmc
output from mcell_mc_hierarchy, defining groups of mcs
supmc_key
filename of color index, specifying an ordered list of supmc ids and colors, to be colored in the order of apperance (i.e. last line overrid previous lines). Expected field names: supid, color, name
tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.
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| mc_colorize_sup_hierarchy | R Documentation |
colorize metacells using a set of super MCs derived by hclust, colored according to a user defined table
Description
colorize metacells using a set of super MCs derived by hclust, colored according to a user defined table
Usage
mc_colorize_sup_hierarchy(mc_id, supmc, supmc_key, gene_key = NULL)
Arguments
mc_id |
metacell id in scdb |
supmc |
output from mcell_mc_hierarchy, defining groups of mcs |
supmc_key |
filename of color index, specifying an ordered list of supmc ids and colors, to be colored in the order of apperance (i.e. last line overrid previous lines). Expected field names: supid, color, name |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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