mcell_add_cgraph_bknn_norm_mc: Build a cell graph using balanced knn after normalizing over...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Build a cell graph using balanced knn after normalizing over a given metacell model

Description

Build a cell graph using balanced knn after normalizing over a given metacell model

Usage

mcell_add_cgraph_bknn_norm_mc(graph_id, mat_id, gset_id, K, mc_to_norm)

Arguments

graph_id	new graph id to create
mat_id	matrix object id
gset_id	gset object id defining the gene features used for computing distances
K	the guideline Knn parameter. The balanced will be constructed aiming at K edges per cell

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.