mcell_compare_bulk: Utility plot function to compare bulk expression of two...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Utility plot function to compare bulk expression of two batches/metadata factors

Description

Utility plot function to compare bulk expression of two batches/metadata factors

Usage

mcell_compare_bulk(
  mat_id,
  meta_field = NULL,
  v1 = NULL,
  v2 = NULL,
  mc_id = NULL,
  mc1 = -1,
  mc2 = -1,
  mc_to_focus = NULL,
  genes = NULL,
  cex = 0.5,
  text_cex = 1,
  n_reg = 5,
  fig_nm = NULL,
  top_genes = 10,
  fig_h = 600,
  fig_w = 800
)

Arguments

mat_id	matrix id to use
meta_field	metadata field to select cells, if not specified than a metacell must be specified
v1	first set metadata value
v2	secod set metadata value
mc_id	metacell model (must be specified if meta_field is not used)
mc1	metacell id to define cells in first set
mc2	metacell id to define cells in second set
mc_to_focus	metacell IDs to restrict analysis of metadata comparison
genes	genes to highlight (optional)

tanaylab/metacell documentation built on Oct. 19, 2023, 1:01 p.m.