API for trichelab/spiky
Spike-in calibration for cell-free MeDIP
| Global functions | |
|---|---|
| .getConcFromFraglen | Source code |
| .get_base_name | Source code |
| .gr_prediction_to_df | Source code |
| .load_genome | Source code |
| .parse_tabix | Source code |
| .rename | Source code |
| .renameBins | Source code |
| .rfg | Source code |
| .seqinfo_from_targets | Source code |
| .tally | Source code |
| .tidyfg | Source code |
| .tidysc | Source code |
| .toGRs | Source code |
| .toPairs | Source code |
| add_frag_info | Man page Source code |
| bam_to_bins | Man page Source code |
| bin_pmol | Man page Source code |
| convertPairedGRtoGR | Man page Source code |
| covg_to_df | Man page Source code |
| dedup | Man page |
| find_spike_contigs | Man page Source code |
| genbank_mito | Man page |
| generate_spike_fasta | Man page Source code |
| genomic_res | Man page |
| get_base_name | Man page Source code |
| get_binned_coverage | Man page Source code |
| get_merged_gr | Man page Source code |
| get_spike_depth | Man page Source code |
| get_spiked_coverage | Man page Source code |
| kmax | Man page Source code |
| kmers | Man page Source code |
| methylation_specificity | Man page Source code |
| model_bam_standards | Man page Source code |
| model_glm_pmol | Man page Source code |
| parse_spike_UMI | Man page Source code |
| phage | Man page |
| plot,Rle,ANY-method | Man page |
| plot,SimpleRleList,ANY-method | Man page |
| predict_pmol | Man page Source code |
| process_spikes | Man page Source code |
| read_bedpe | Man page Source code |
| rename_spike_seqlevels | Man page Source code |
| rename_spikes | Man page Source code |
| scan_genomic_bedpe | Man page Source code |
| scan_genomic_contigs | Man page Source code |
| scan_methylation_specificity | Man page Source code |
| scan_spike_bedpe | Man page Source code |
| scan_spike_contigs | Man page Source code |
| scan_spike_counts | Man page Source code |
| scan_spiked_bam | Man page Source code |
| seqinfo_from_header | Man page Source code |
| spike | Man page |
| spike_bland_altman_plot | Man page Source code |
| spike_counts | Man page Source code |
| spike_cram_counts | Man page |
| spike_read_counts | Man page |
| spike_res | Man page |
| spiky-methods | Man page |
| ssb_res | Man page |
| testGR | Man page |
| tile_bins | Man page Source code |
