testGR: a test GRanges with UMI'ed genomic sequences used as controls
In trichelab/spiky: Spike-in calibration for cell-free MeDIP
testGR R Documentation
a test GRanges with UMI'ed genomic sequences used as controls
Description
Sources and overlap widths of various read sequences in a test CRAM.
Usage
data(testGR)
Format
A GRanges object with an mcols() DataFrame containing
- UMI1
the unique molecular identifier on the forward read
- UMI2
the unique molecular identifier on the reverse read
- seq
the sequence of the fragment
- name
the name of the fragment
- score
whether the fragment passes filters (always 1)
Source
Generated using inst/script/loadTest.R
trichelab/spiky documentation built on Sept. 17, 2022, 8:44 a.m.
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| testGR | R Documentation |
a test GRanges with UMI'ed genomic sequences used as controls
Description
Sources and overlap widths of various read sequences in a test CRAM.
Usage
data(testGR)
Format
A GRanges object with an mcols() DataFrame containing
- UMI1
the unique molecular identifier on the forward read
- UMI2
the unique molecular identifier on the reverse read
- seq
the sequence of the fragment
- name
the name of the fragment
- score
whether the fragment passes filters (always 1)
Source
Generated using inst/script/loadTest.R
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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