rename_spikes: for BAM/CRAM files with renamed contigs, we need to rename...
In trichelab/spiky: Spike-in calibration for cell-free MeDIP
View source: R/rename_spikes.R
rename_spikes R Documentation
for BAM/CRAM files with renamed contigs, we need to rename spike rows
Description
This function does that.
Usage
rename_spikes(x, spike)
Arguments
x
a BAM/CRAM file, hopefully with an index
spike
a DataFrame where spike$sequence is a DNAStringSet
Value
a DataFrame with renamed contigs (rows)
See Also
generate_spike_fasta
trichelab/spiky documentation built on Sept. 17, 2022, 8:44 a.m.
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View source: R/rename_spikes.R
| rename_spikes | R Documentation |
for BAM/CRAM files with renamed contigs, we need to rename spike rows
Description
This function does that.
Usage
rename_spikes(x, spike)
Arguments
x |
a BAM/CRAM file, hopefully with an index |
spike |
a DataFrame where spike$sequence is a DNAStringSet |
Value
a DataFrame with renamed contigs (rows)
See Also
generate_spike_fasta
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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