View source: R/methylation_specificity.R
In a cfMeDIP experiment, the yield of methylated fragments should be >95% (ideally 98-99%) due to the nature of the assay.
GRanges of spike contigs (e.g. output object from scan_spiked_bam, scan_spike_contigs, or scan_spike_bedpe)
spike contig database, if needed (e.g. data(spike))
list with median and mean coverage across spike contigs
data(genomic_res) data(spike_res) data(spike, package="spiky") methylation_specificity(spike_res, spike=spike)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.