spike_cram_counts: spike-in counts, as a long data.frame
In trichelab/spiky: Spike-in calibration for cell-free MeDIP
spike_cram_counts R Documentation
spike-in counts, as a long data.frame
Description
A data.frame with spike-in results from CRAM files (generated from scan_spike_counts(CRAMs, spike=spike))
Usage
data(spike_cram_counts)
Format
A data.frame object with
- frag_grp
the encoded spike contig name: basepairs_CpGs_GCpercent
- id
subject from whom cfMeDIP spike reads (column 3) were counted
- read_count
read coverage for this spike in this subject (column 2)
Source
Generated from scan_spike_counts(CRAMs, spike=spike) using example CRAMs
containing spike contigs
trichelab/spiky documentation built on Sept. 17, 2022, 8:44 a.m.
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| spike_cram_counts | R Documentation |
spike-in counts, as a long data.frame
Description
A data.frame with spike-in results from CRAM files (generated from scan_spike_counts(CRAMs, spike=spike))
Usage
data(spike_cram_counts)
Format
A data.frame object with
- frag_grp
the encoded spike contig name: basepairs_CpGs_GCpercent
- id
subject from whom cfMeDIP spike reads (column 3) were counted
- read_count
read coverage for this spike in this subject (column 2)
Source
Generated from scan_spike_counts(CRAMs, spike=spike) using example CRAMs containing spike contigs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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