spike_res: A Granges object with spike-in sequence coverage, and...
In trichelab/spiky: Spike-in calibration for cell-free MeDIP
spike_res R Documentation
A Granges object with spike-in sequence coverage, and
summarized for each spike contig as (the default) max coverage. (In other
words, the default output of scan_spike_contigs or scan_spike_bedpe)
This represents what most users will want to generate from their own spike-in BAMs or BEDPEs, and
is used repeatedly in downstream examples throughout the package.
Description
A Granges object with spike-in sequence coverage, and
summarized for each spike contig as (the default) max coverage. (In other
words, the default output of scan_spike_contigs or scan_spike_bedpe)
This represents what most users will want to generate from their own spike-in BAMs or BEDPEs, and
is used repeatedly in downstream examples throughout the package.
Usage
data(spike_res)
Format
A GRanges of coverage results with one metadata column, coverage
Source
Generated using scan_spike_bedpe or scan_spike_contigs on an example bedpe or bam
containing spike contigs.
trichelab/spiky documentation built on Sept. 17, 2022, 8:44 a.m.
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| spike_res | R Documentation |
A Granges object with spike-in sequence coverage, and
summarized for each spike contig as (the default) max coverage. (In other
words, the default output of scan_spike_contigs or scan_spike_bedpe)
This represents what most users will want to generate from their own spike-in BAMs or BEDPEs, and
is used repeatedly in downstream examples throughout the package.
Description
A Granges object with spike-in sequence coverage, and
summarized for each spike contig as (the default) max coverage. (In other
words, the default output of scan_spike_contigs or scan_spike_bedpe)
This represents what most users will want to generate from their own spike-in BAMs or BEDPEs, and
is used repeatedly in downstream examples throughout the package.
Usage
data(spike_res)
Format
A GRanges of coverage results with one metadata column, coverage
Source
Generated using scan_spike_bedpe or scan_spike_contigs on an example bedpe or bam containing spike contigs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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