kmers: oligonucleotideFrequency, but less letters and more...
In trichelab/spiky: Spike-in calibration for cell-free MeDIP
kmers R Documentation
oligonucleotideFrequency, but less letters and more convenient.
Description
oligonucleotideFrequency, but less letters and more convenient.
Usage
kmers(x, k = 6)
Arguments
x
BSgenome, DFrame with sequence column, or DNAStringSet
k
the length of the kmers (default is 6)
Details
The companion kmax function finds the maximum frequency kmer for each
contig and plots all of them together for comparison purposes.
Value
a matrix of contigs (rows) by kmer frequencies (columns)
See Also
kmax
Examples
data(genbank_mito, package="spiky")
mtk6 <- kmers(genbank_mito, k=6)
kmax(mtk6)
data(phage, package="spiky")
phk6 <- kmers(phage, k=6)
kmax(phk6)
trichelab/spiky documentation built on Sept. 17, 2022, 8:44 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| kmers | R Documentation |
oligonucleotideFrequency, but less letters and more convenient.
Description
oligonucleotideFrequency, but less letters and more convenient.
Usage
kmers(x, k = 6)
Arguments
x |
BSgenome, DFrame with |
k |
the length of the kmers (default is 6) |
Details
The companion kmax function finds the maximum frequency kmer for each
contig and plots all of them together for comparison purposes.
Value
a matrix of contigs (rows) by kmer frequencies (columns)
See Also
kmax
Examples
data(genbank_mito, package="spiky") mtk6 <- kmers(genbank_mito, k=6) kmax(mtk6) data(phage, package="spiky") phk6 <- kmers(phage, k=6) kmax(phk6)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.