scan_spike_bedpe: Scan spikes BEDPE
In trichelab/spiky: Spike-in calibration for cell-free MeDIP
View source: R/scan_spike_bedpe.R
scan_spike_bedpe R Documentation
Scan spikes BEDPE
Description
Scan spikes BEDPE
Usage
scan_spike_bedpe(bedpe, spike, how = "max")
Arguments
bedpe
the BEDPE file path, or output from read_bedpe()
spike
information about the spikes (default: load spike)
how
how to summarize the per-spike coverage (max)
Value
a GRanges with coverage
Examples
data(spike, package="spiky")
fl <- system.file("extdata", "example_spike_bedpe.bed.gz", package="spiky",mustWork=TRUE)
scan_spike_bedpe(fl,spike=spike) # will warn user about spike contigs
trichelab/spiky documentation built on Sept. 17, 2022, 8:44 a.m.
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View source: R/scan_spike_bedpe.R
| scan_spike_bedpe | R Documentation |
Scan spikes BEDPE
Description
Scan spikes BEDPE
Usage
scan_spike_bedpe(bedpe, spike, how = "max")
Arguments
bedpe |
the BEDPE file path, or output from read_bedpe() |
spike |
information about the spikes (default: load |
how |
how to summarize the per-spike coverage (max) |
Value
a GRanges with coverage
Examples
data(spike, package="spiky")
fl <- system.file("extdata", "example_spike_bedpe.bed.gz", package="spiky",mustWork=TRUE)
scan_spike_bedpe(fl,spike=spike) # will warn user about spike contigs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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