View source: R/scan_spike_bedpe.R
scan_spike_bedpe | R Documentation |
Scan spikes BEDPE
scan_spike_bedpe(bedpe, spike, how = "max")
bedpe |
the BEDPE file path, or output from read_bedpe() |
spike |
information about the spikes (default: load |
how |
how to summarize the per-spike coverage (max) |
a GRanges with coverage
data(spike, package="spiky") fl <- system.file("extdata", "example_spike_bedpe.bed.gz", package="spiky",mustWork=TRUE) scan_spike_bedpe(fl,spike=spike) # will warn user about spike contigs
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