genomic_res: A Granges object with genomic coverage from chr21q22, binned...

In trichelab/spiky: Spike-in calibration for cell-free MeDIP

A Granges object with genomic coverage from chr21q22, binned every 300bp for the genomic contigs then averaged across the bin. (In other words, the default output of scan_genomic_contigs or scan_genomic_bedpe, restricted to a small enough set of genomic regions to be practical for examples.) This represents what most users will want to generate from their own genomic BAMs or BEDPEs, and is used repeatedly in downstream examples throughout the package.

Description

A Granges object with genomic coverage from chr21q22, binned every 300bp for the genomic contigs then averaged across the bin. (In other words, the default output of scan_genomic_contigs or scan_genomic_bedpe, restricted to a small enough set of genomic regions to be practical for examples.) This represents what most users will want to generate from their own genomic BAMs or BEDPEs, and is used repeatedly in downstream examples throughout the package.

Usage

data(genomic_res)

Format

A GRanges of coverage results with one metadata column, coverage

Source

Generated using scan_genomic_bedpe or scan_genomic_contigs on an example bedpe or bam containing chr21q22 contigs.

trichelab/spiky documentation built on Sept. 17, 2022, 8:44 a.m.