spike: spike-in contig properties for Sam's cfMeDIP spikes
In trichelab/spiky: Spike-in calibration for cell-free MeDIP
spike R Documentation
spike-in contig properties for Sam's cfMeDIP spikes
Description
A DataFrame with sequence, concentration, and other properties of Sam's
synthetic cfMeDIP spike-in controls. The row names redudantly encode some
of these properties, such as the number of CpGs in the spike-in sequence.
Usage
data(spike)
Format
A DataFrame object with
- sequence
contig sequence, as a DNAStringSet
- methylated
are the CpGs in this spike-in methylated? 0 or 1
- CpGs
number of CpG dinucleotides in the spike, from 1 to 16
- fmol
femtomolar concentration of the spike-in for standard mix
- molmass
molar mass of spike-in sequence
Source
https://doi.org/10.1101/2021.02.12.430289
trichelab/spiky documentation built on Sept. 17, 2022, 8:44 a.m.
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| spike | R Documentation |
spike-in contig properties for Sam's cfMeDIP spikes
Description
A DataFrame with sequence, concentration, and other properties of Sam's synthetic cfMeDIP spike-in controls. The row names redudantly encode some of these properties, such as the number of CpGs in the spike-in sequence.
Usage
data(spike)
Format
A DataFrame object with
- sequence
contig sequence, as a DNAStringSet
- methylated
are the CpGs in this spike-in methylated? 0 or 1
- CpGs
number of CpG dinucleotides in the spike, from 1 to 16
- fmol
femtomolar concentration of the spike-in for standard mix
- molmass
molar mass of spike-in sequence
Source
https://doi.org/10.1101/2021.02.12.430289
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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