tile_bins: Tile the assembly-based contigs of a merged assembly/spike...
In trichelab/spiky: Spike-in calibration for cell-free MeDIP
tile_bins R Documentation
Tile the assembly-based contigs of a merged assembly/spike GRanges.
Description
refactored out of scan_spiked_bam for more explicit information flow
Usage
tile_bins(gr, binwidth = 300L)
Arguments
gr
the GRanges
binwidth
bin width to tile (default is 300)
Value
a GRanges of bins
Examples
bam <- system.file("extdata", "ex1.bam", package="Rsamtools",
mustWork=TRUE)
gr <- as(seqinfo_from_header(bam), "GRanges")
genome(gr) <- "notspike"
tile_bins(gr)
trichelab/spiky documentation built on Sept. 17, 2022, 8:44 a.m.
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| tile_bins | R Documentation |
Tile the assembly-based contigs of a merged assembly/spike GRanges.
Description
refactored out of scan_spiked_bam for more explicit information flow
Usage
tile_bins(gr, binwidth = 300L)
Arguments
gr |
the GRanges |
binwidth |
bin width to tile (default is 300) |
Value
a GRanges of bins
Examples
bam <- system.file("extdata", "ex1.bam", package="Rsamtools",
mustWork=TRUE)
gr <- as(seqinfo_from_header(bam), "GRanges")
genome(gr) <- "notspike"
tile_bins(gr)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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