Files in ttriche/biscuitEater
a bunch of convenience functions for Biscuit

.gitignore
DESCRIPTION
LICENSE
Makefile
NAMESPACE
NEWS.md R/CpGindex.R R/RRBSeq.R R/TN_WGBS_CNA.R R/WGBSage.R R/WGBSeq.R R/WGBSseg.R R/atRegions.R R/bigWigsToSegs.R R/binCoverage.R R/biscuitMetadata.R R/biscuiteer.R R/byChromArm.R R/byExtremality.R R/checkBiscuitBED.R R/condenseSampleNames.R R/correctBsSeqCoverage.R R/correctCoverage.R R/correctDepth.R R/extremality.R R/fexpit.R R/filterLoci.R R/fixAge.R R/fixNAs.R R/flogit.R R/generics.R R/getClock.R R/getLogitFracMeth.R R/grToSeg.R R/loadHDF5.R R/makeBSseq.R R/plotSegs.R R/read.biscuit.R R/saveHDF5.R R/segToGr.R R/simplifySampleNames.R R/summarizeBsSeqOver.R R/unionize.R R/unionizeBSseq.R README.md
appveyor.yml
data/ENSR_subset.hg19.rda
data/ENSR_subset.hg38.rda
data/GRCh37.chromArm.rda
data/GRCh38.chromArm.rda
data/H9state23unmeth.hg19.rda
data/H9state23unmeth.hg38.rda
data/HMM_CpG_islands.hg19.rda
data/HMM_CpG_islands.hg38.rda
data/PMDs.hg19.rda
data/PMDs.hg38.rda
data/Zhou_solo_WCGW_inCommonPMDs.hg19.rda
data/Zhou_solo_WCGW_inCommonPMDs.hg38.rda
data/bsgc.hg19.rda
data/clocks.rda
data/hg19.chromArm.rda
data/hg38.chromArm.rda
data/maps.hg19.rda
data/openSeas.hg19.rda
data/openSeas.hg38.rda
data/seqinfo.hg19.rda
data/seqinfo.hg38.rda
data/seqinfo.mm10.rda
inst/extdata/HMM_CpG_islands.hg19.bed.gz
inst/extdata/HMM_CpG_islands.hg19.bed.gz.tbi
inst/extdata/HMM_CpG_islands.hg38.bed.gz
inst/extdata/HMM_CpG_islands.hg38.bed.gz.tbi
inst/extdata/HannumClock.csv
inst/extdata/HorvathClock.csv
inst/extdata/SkinAndBloodClock.csv
inst/extdata/Zhou_common_PMDs.hg19.bed.gz
inst/extdata/Zhou_common_PMDs.hg19.bed.gz.tbi
inst/extdata/Zhou_solo_WCGW_inCommonPMDs.hg19.bed.gz
inst/extdata/Zhou_solo_WCGW_inCommonPMDs.hg19.bed.gz.tbi
inst/extdata/clocks.R inst/extdata/getOpenSeas.R
inst/extdata/mfests.rds
inst/extdata/regBuilds.rds
man/CpGindex.Rd man/RRBSeq.Rd man/TN_WGBS_CNA.Rd man/WGBSage.Rd man/WGBSeq.Rd man/WGBSseg.Rd man/atRegions.Rd man/bigWigsToSegs.Rd man/binCoverage.Rd man/biscuitMetadata.Rd man/biscuiteer-methods.Rd man/byChromArm.Rd man/byExtremality.Rd man/checkBiscuitBED.Rd man/condenseSampleNames.Rd man/correctBsSeqCoverage.Rd man/correctDepth.Rd man/extremality.Rd man/fexpit.Rd man/filterLoci.Rd man/fixAge.Rd man/fixNAs.Rd man/flogit.Rd man/getClock.Rd man/getLogitFracMeth.Rd man/grToSeg.Rd man/loadHDF5.Rd man/makeBSseq.Rd man/plotSegs.Rd man/read.biscuit.Rd man/saveHDF5.Rd man/segToGr.Rd man/simplifySampleNames.Rd man/summarizeBsSeqOver.Rd man/unionize.Rd man/unionizeBSseq.Rd tests/testthat.R tests/testthat/helper.R tests/testthat/test-something.R
ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.