correctDepth: tweaked version of HMMcopy's GC bias and mappability function
In ttriche/biscuitEater: a bunch of convenience functions for Biscuit
Description
Usage
Arguments
Value
Description
tweaked version of HMMcopy's GC bias and mappability function
Usage
1
2
correctDepth(x, mappability = 0.9, samplesize = 50000,
verbose = TRUE)
Arguments
x
binned hg19 coverage with GC content and mappability cols
mappability
minimum mappability to use bins as examplars for others
samplesize
lowess sample size (points to sample; default 50000)
verbose
be chatty? (TRUE)
Value
1
corrected tumor and normal read counts
ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.
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Description Usage Arguments Value
Description
tweaked version of HMMcopy's GC bias and mappability function
Usage
1 2 | correctDepth(x, mappability = 0.9, samplesize = 50000,
verbose = TRUE)
|
Arguments
x |
binned hg19 coverage with GC content and mappability cols |
mappability |
minimum mappability to use bins as examplars for others |
samplesize |
lowess sample size (points to sample; default 50000) |
verbose |
be chatty? (TRUE) |
Value
1 | corrected tumor and normal read counts
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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