correctBsSeqCoverage: tweaked version of TitanCNA's preprocessing
In ttriche/biscuitEater: a bunch of convenience functions for Biscuit
Description
Usage
Arguments
Value
Description
limits coverage to chr1:22,X, for better or for worse
Usage
1
correctBsSeqCoverage(tumor, normal, bsgc = NULL, maps = NULL)
Arguments
tumor
binned tumor coverage (a GRanges from binCoverage)
normal
binned normal coverage (a GRanges from binCoverage)
bsgc
binned c2t GC content (default is bsgc.hg19, 1kb bins)
maps
binned c2t mappability (default is maps.hg19, 1kb bins)
Value
1
corrected tumor and normal read counts
ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.
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Description Usage Arguments Value
Description
limits coverage to chr1:22,X, for better or for worse
Usage
1 | correctBsSeqCoverage(tumor, normal, bsgc = NULL, maps = NULL)
|
Arguments
tumor |
binned tumor coverage (a GRanges from binCoverage) |
normal |
binned normal coverage (a GRanges from binCoverage) |
bsgc |
binned c2t GC content (default is bsgc.hg19, 1kb bins) |
maps |
binned c2t mappability (default is maps.hg19, 1kb bins) |
Value
1 | corrected tumor and normal read counts
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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