summarizeBsSeqOver: Pretty much what it says on the tin.
In ttriche/biscuitEater: a bunch of convenience functions for Biscuit
Description
Usage
Arguments
Value
Description
Summarize methylation over regions. Mostly a wrapper for getMeth.
Usage
1
summarizeBsSeqOver(bsseq, segs, dropNA = FALSE, impute = FALSE)
Arguments
bsseq
the BSseq object to summarize
segs
regions to summarize over (a GRanges; no GRangesLists yet)
dropNA
whether to drop rows with > half of samples NaN (FALSE)
impute
whether to impute NAs/NaNs (FALSE)
Value
matrix a matrix of regional methylation fractions
ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.
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Description Usage Arguments Value
Description
Summarize methylation over regions. Mostly a wrapper for getMeth.
Usage
1 | summarizeBsSeqOver(bsseq, segs, dropNA = FALSE, impute = FALSE)
|
Arguments
bsseq |
the BSseq object to summarize |
segs |
regions to summarize over (a GRanges; no GRangesLists yet) |
dropNA |
whether to drop rows with > half of samples NaN (FALSE) |
impute |
whether to impute NAs/NaNs (FALSE) |
Value
matrix a matrix of regional methylation fractions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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