filterLoci: filter loci with zero coverage in one or more conditions

Description Usage Arguments Details Value See Also

Description

This function used to be part of dmrseq, or so we recall. In any event, it is a colossal drag to set up a dmrseq run only to discover that it fails for seemingly mysterious reasons owing to lack of coverage.

Usage

1
filterLoci(bs, testCovariate, ...)

Arguments

bs

a bsseq object for filtration

testCovariate

the name of the pData column dmrseq will test on

...

not currently used; may pass to dmrseq in the future

Details

The code is adapted from the precheck loop of dmrseq::dmrseq().

Value

1
           a bsseq object ready for dmrseq to use

See Also

dmrseq

WGBSeq

RRBSeq


ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.