filterLoci: filter loci with zero coverage in one or more conditions
In ttriche/biscuitEater: a bunch of convenience functions for Biscuit
Description
Usage
Arguments
Details
Value
See Also
Description
This function used to be part of dmrseq, or so we recall. In any event,
it is a colossal drag to set up a dmrseq run only to discover that it fails
for seemingly mysterious reasons owing to lack of coverage.
Usage
1
filterLoci(bs, testCovariate, ...)
Arguments
bs
a bsseq object for filtration
testCovariate
the name of the pData column dmrseq will test on
...
not currently used; may pass to dmrseq in the future
Details
The code is adapted from the precheck loop of dmrseq::dmrseq().
Value
1
a bsseq object ready for dmrseq to use
See Also
dmrseq
WGBSeq
RRBSeq
ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.
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Description Usage Arguments Details Value See Also
Description
This function used to be part of dmrseq, or so we recall. In any event, it is a colossal drag to set up a dmrseq run only to discover that it fails for seemingly mysterious reasons owing to lack of coverage.
Usage
1 | filterLoci(bs, testCovariate, ...)
|
Arguments
bs |
a bsseq object for filtration |
testCovariate |
the name of the pData column dmrseq will test on |
... |
not currently used; may pass to dmrseq in the future |
Details
The code is adapted from the precheck loop of dmrseq::dmrseq().
Value
1 | a bsseq object ready for dmrseq to use
|
See Also
dmrseq
WGBSeq
RRBSeq
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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