byChromArm: an idiotically simple parallelization step
In ttriche/biscuitEater: a bunch of convenience functions for Biscuit
Description
Usage
Arguments
Value
Description
This function just splits an object by chromosome arm, which tends to make
parallelization MUCH easier, as cross-arm dependencies are unusual, and the
larger chromosomes can thus be split across processes or machines without
worrying much about data starvation for processes on smaller chromosomes.
Usage
1
byChromArm(x, arms = NULL)
Arguments
x
anything with a GRanges in it: BSseq, SummarizedExperiment, etc.
arms
(optional) another GRanges, but just specifying chromosome arms.
Value
1
ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.
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Description Usage Arguments Value
Description
This function just splits an object by chromosome arm, which tends to make parallelization MUCH easier, as cross-arm dependencies are unusual, and the larger chromosomes can thus be split across processes or machines without worrying much about data starvation for processes on smaller chromosomes.
Usage
1 | byChromArm(x, arms = NULL)
|
Arguments
x |
anything with a GRanges in it: BSseq, SummarizedExperiment, etc. |
arms |
(optional) another GRanges, but just specifying chromosome arms. |
Value
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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