RRBSeq: eRRBS settings appropriate to dmrseq
In ttriche/biscuitEater: a bunch of convenience functions for Biscuit
Description
Usage
Arguments
Value
Description
eRRBS settings appropriate to dmrseq
Usage
1
Arguments
bs
a bsseq object
testCovariate
the pData column to test on
cutoff
the minimum CpG-wise difference to use (0.2)
bpSpan
span of smoother AND max gap in DMR CpGs (750)
...
other arguments to pass along to dmrseq
Value
1
a GRanges object (same as from dmrseq)
ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.
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Description Usage Arguments Value
Description
eRRBS settings appropriate to dmrseq
Usage
1 |
Arguments
bs |
a bsseq object |
testCovariate |
the pData column to test on |
cutoff |
the minimum CpG-wise difference to use (0.2) |
bpSpan |
span of smoother AND max gap in DMR CpGs (750) |
... |
other arguments to pass along to dmrseq |
Value
1 | a GRanges object (same as from dmrseq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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