RRBSeq: eRRBS settings appropriate to dmrseq

Description Usage Arguments Value

Description

eRRBS settings appropriate to dmrseq

Usage

1
RRBSeq(bs, testCovariate, cutoff = 0.2, bpSpan = 750, ...)

Arguments

bs

a bsseq object

testCovariate

the pData column to test on

cutoff

the minimum CpG-wise difference to use (0.2)

bpSpan

span of smoother AND max gap in DMR CpGs (750)

...

other arguments to pass along to dmrseq

Value

1
           a GRanges object (same as from dmrseq)

ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.