atRegions: summarize a bsseq dataset over defined regions (for e.g....
In ttriche/biscuitEater: a bunch of convenience functions for Biscuit
Description
summarize a bsseq dataset over defined regions (for e.g. cBioPortal)
Usage
1
Arguments
bsseq
a bsseq object
regions
a GRanges or GRangesList of regions
mappings
a mapping table, with rownames(mappings) == colnames(bsseq)
nm
column of the mapping table to map to (default "POETICname")
...
other arguments to pass on to summarizeBsSeqOver
ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.
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Description
summarize a bsseq dataset over defined regions (for e.g. cBioPortal)
Usage
1 |
Arguments
bsseq |
a bsseq object |
regions |
a GRanges or GRangesList of regions |
mappings |
a mapping table, with rownames(mappings) == colnames(bsseq) |
nm |
column of the mapping table to map to (default "POETICname") |
... |
other arguments to pass on to summarizeBsSeqOver |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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