summarize a bsseq dataset over defined regions (for e.g. cBioPortal)
1 |
bsseq |
a bsseq object |
regions |
a GRanges or GRangesList of regions |
mappings |
a mapping table, with rownames(mappings) == colnames(bsseq) |
nm |
column of the mapping table to map to (default "POETICname") |
... |
other arguments to pass on to summarizeBsSeqOver |
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