atRegions: summarize a bsseq dataset over defined regions (for e.g....

Description Usage Arguments

Description

summarize a bsseq dataset over defined regions (for e.g. cBioPortal)

Usage

1
atRegions(bsseq, regions, mappings = NULL, nm = "POETICname", ...)

Arguments

bsseq

a bsseq object

regions

a GRanges or GRangesList of regions

mappings

a mapping table, with rownames(mappings) == colnames(bsseq)

nm

column of the mapping table to map to (default "POETICname")

...

other arguments to pass on to summarizeBsSeqOver


ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.