binCoverage: bin CpG/CpH coverage to simplify & improve CNA "sketching"...
In ttriche/biscuitEater: a bunch of convenience functions for Biscuit
Description
Usage
Arguments
Value
Description
FIXME: turn this into a generic for bsseq objects, for bigWigs, for ...
FIXME: figure out how to estimate the most likely GCbias ~ DNAme linkage
Usage
1
binCoverage(x, bins, which = NULL, QDNAseq = TRUE, readLen = 100)
Arguments
x
a bsseq object, maybe HDF5-backed, for getCoverage()
bins
bins to summarize over (from tileGenome or QDNAseq.xxYY)
which
limit to specific regions? (functions as in import())
QDNAseq
return a QDNAseqReadCounts? (if FALSE, return a GRanges)
readLen
correction factor for coverage: read length in bp (100)
Value
1
binned read counts
ttriche/biscuitEater documentation built on May 15, 2019, 4:18 p.m.
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Description Usage Arguments Value
Description
FIXME: turn this into a generic for bsseq objects, for bigWigs, for ... FIXME: figure out how to estimate the most likely GCbias ~ DNAme linkage
Usage
1 | binCoverage(x, bins, which = NULL, QDNAseq = TRUE, readLen = 100)
|
Arguments
x |
a bsseq object, maybe HDF5-backed, for getCoverage() |
bins |
bins to summarize over (from tileGenome or QDNAseq.xxYY) |
which |
limit to specific regions? (functions as in import()) |
QDNAseq |
return a QDNAseqReadCounts? (if FALSE, return a GRanges) |
readLen |
correction factor for coverage: read length in bp (100) |
Value
1 | binned read counts
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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