API for vitkl/SLIMFinderR
Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference

Global functions
ELMdb2GRanges Man page
GRangesINinteractionSubsetFASTA Man page
LSFrunQSLIMFinder Man page
PPInetwork2SLIMFinder Man page
QSLIMFinderCommand Man page
SLIMFinderOcc2GRanges Man page
benchmarkMotifs Man page
benchmarkMotifsROC Man page
centerDomains Man page
domainProteinPairMatch Man page
filterBYmotifType Man page
filterInteractionSubsetFASTA_list Man page
findOverlapsBench Man page
groupQSLIMFinderCommand Man page
interactionSubsetFASTA Man page
interactionSubsetMapID Man page
jobsCrashed Man page
listInteractionSubsetFASTA Man page
listSingleInteractFromSet2 Man page
mBenchmarkMotifs Man page
mBenchmarkMotifsROC Man page
mQSLIMFinderCommand Man page
merge2GRangesmcols Man page
modifyMemoryInBsub Man page
motifVariantClass Man page
plotEnrichment Man page
printMotifDomainTable Man page
queryOCCByMCOL Man page
randomGRanges Man page
readQSLIMFinderMain Man page
readQSLIMFinderOccurence Man page
recodeANDinteractionSubsetFASTA Man page
recodeFASTA Man page
reduceOverlappingGRanges Man page
reduceWithMcols Man page
runCompariMotif3 Man page
runQSLIMFinder Man page
singleInteractFromSet2 Man page
subset2setsBy1ID Man page
writeInteractionSubsetFASTA_list Man page
writePatternList Man page
vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.