randomGRanges: Generate random GRanges of equal length in the same sequence

In vitkl/SLIMFinderR: Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference

Description

Generate random GRanges of equal length in the same sequence

Usage

randomGRanges(GRanges, N = 1, replace = T, within1sequence = T)

Arguments

GRanges	GRanges object
N	how many randomised GRanges to create
replace	passed to sample.int
within1sequence	logical, if TRUE ranges of equal lenght are sampled from the same sequence. If false, ranges of equal length are sampled from all sequences (while keeping the number of ranges in each sequence).

Value

Genomic Ranges list object containing N randomised GRanges objects

Author(s)

Vitalii Kleshchevnikov

See Also

ELMdb2GRanges, GRangesINinteractionSubsetFASTA

vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.