Files in vitkl/SLIMFinderR

Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/GRangesINinteractionSubsetFASTA.R R/PPInetwork2SLIMFinder.R R/QSLIMFinderCommand.R R/SLIMFinderOcc2GRanges.R R/benchmarkMotifs.R R/benchmarkMotifsROC.R R/centerDomains.R R/domainProteinPairMatch.R R/filterInteractionSubsetFASTA_list.R R/findOverlapsBench.R R/interactionSubsetFASTA.R R/mInteractionSubsetFASTA.R R/plotEnrichment.R R/printMotifDomainTable.R R/randomGRanges.R R/readQSLIMFinderMain.R R/recodeFASTA.R R/runCompariMotif3.R R/runQSLIMFinder.R R/subset2setsBy1ID.R R/writeInteractionSubsetFASTA_list.R README.md

SLIMFinderR.Rproj

docs/LICENSE-text.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/ELMdb2GRanges.html

docs/reference/GRangesINinteractionSubsetFASTA.html

docs/reference/PPInetwork2SLIMFinder.html

docs/reference/QSLIMFinderCommand.html

docs/reference/SLIMFinderOcc2GRanges.html

docs/reference/benchmarkMotifs.html

docs/reference/benchmarkMotifsROC.html

docs/reference/centerDomains.html

docs/reference/domainProteinPairMatch.html

docs/reference/filterBYmotifType.html

docs/reference/filterInteractionSubsetFASTA_list.html

docs/reference/findOverlapsBench.html

docs/reference/index.html

docs/reference/interactionSubsetFASTA.html

docs/reference/interactionSubsetMapID.html

docs/reference/listInteractionSubsetFASTA.html

docs/reference/listSingleInteractFromSet2.html

docs/reference/merge2GRangesmcols.html

docs/reference/motifVariantClass.html

docs/reference/plotEnrichment.html

docs/reference/printMotifDomainTable.html

docs/reference/randomGRanges.html

docs/reference/readQSLIMFinderMain.html

docs/reference/recodeANDinteractionSubsetFASTA.html

docs/reference/recodeFASTA.html

docs/reference/reduceOverlappingGRanges.html

docs/reference/reduceWithMcols.html

docs/reference/runCompariMotif3.html

docs/reference/runQSLIMFinder.html

docs/reference/singleInteractFromSet2.html

docs/reference/subset2setsBy1ID.html

docs/reference/writeInteractionSubsetFASTA_list.html

man/ELMdb2GRanges.Rd man/GRangesINinteractionSubsetFASTA.Rd man/PPInetwork2SLIMFinder.Rd man/QSLIMFinderCommand.Rd man/SLIMFinderOcc2GRanges.Rd man/benchmarkMotifs.Rd man/benchmarkMotifsROC.Rd man/centerDomains.Rd man/domainProteinPairMatch.Rd man/filterBYmotifType.Rd man/filterInteractionSubsetFASTA_list.Rd man/findOverlapsBench.Rd man/interactionSubsetFASTA.Rd man/interactionSubsetMapID.Rd man/listInteractionSubsetFASTA.Rd man/listSingleInteractFromSet2.Rd man/merge2GRangesmcols.Rd man/motifVariantClass.Rd man/plotEnrichment.Rd man/printMotifDomainTable.Rd man/randomGRanges.Rd man/readQSLIMFinderMain.Rd man/recodeANDinteractionSubsetFASTA.Rd man/recodeFASTA.Rd man/reduceOverlappingGRanges.Rd man/reduceWithMcols.Rd man/runCompariMotif3.Rd man/runQSLIMFinder.Rd man/singleInteractFromSet2.Rd man/subset2setsBy1ID.Rd man/writeInteractionSubsetFASTA_list.Rd

vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.