recodeANDinteractionSubsetFASTA: Recode names and retrieve FASTA sequences of interactors of a...
In vitkl/SLIMFinderR: Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Recode names and retrieve FASTA sequences of interactors of a specific protein
Usage
1
recodeANDinteractionSubsetFASTA(subset1, fasta)
Arguments
subset1
interaction_subset_from_2_sets object produced by subset2setsBy1ID
fasta
AAStringSet, names are UniProtKB accessions
Value
object of class interactionSubsetFASTA containing: FASTA sequences for interacting proteins, original interaction_subset_from_2_sets
Author(s)
Vitalii Kleshchevnikov
See Also
subset2setsBy1ID, recodeFASTA, listInteractionSubsetFASTA
Examples
1
subset1_fasta = recodeANDinteractionSubsetFASTA(subset1, fasta)
vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Recode names and retrieve FASTA sequences of interactors of a specific protein
Usage
1 | recodeANDinteractionSubsetFASTA(subset1, fasta)
|
Arguments
subset1 |
interaction_subset_from_2_sets object produced by |
fasta |
AAStringSet, names are UniProtKB accessions |
Value
object of class interactionSubsetFASTA containing: FASTA sequences for interacting proteins, original interaction_subset_from_2_sets
Author(s)
Vitalii Kleshchevnikov
See Also
subset2setsBy1ID, recodeFASTA, listInteractionSubsetFASTA
Examples
1 | subset1_fasta = recodeANDinteractionSubsetFASTA(subset1, fasta)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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