SLIMFinderOcc2GRanges: Read QSLIMFinder (SLIMFinder) occurence output to Genomic...
In vitkl/SLIMFinderR: Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Read QSLIMFinder (SLIMFinder) occurence output to Genomic Ranges object
Usage
1
2
3
SLIMFinderOcc2GRanges(occurence_file = "../viral_project/SLIMFinder_Vidal/result/occurence.txt",
main_file = "../viral_project/SLIMFinder_Vidal/result/main_result.txt",
one_from_cloud = T)
Arguments
occurence_file
a path to a tsv (txt) file containing QSLIMFinder (SLIMFinder) occurence output
main_file
a path to a tsv (txt) file containing QSLIMFinder (SLIMFinder) main output
one_from_cloud
pick only one motif per motif cloud by the lowest p-value (before multiple hypothesis testing correction)
Value
Genomic Ranges object containing QSLIMFinder (SLIMFinder) occurence output
Author(s)
Vitalii Kleshchevnikov
See Also
ELMdb2GRanges, GRangesINinteractionSubsetFASTA
vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
Read QSLIMFinder (SLIMFinder) occurence output to Genomic Ranges object
Usage
1 2 3 | SLIMFinderOcc2GRanges(occurence_file = "../viral_project/SLIMFinder_Vidal/result/occurence.txt",
main_file = "../viral_project/SLIMFinder_Vidal/result/main_result.txt",
one_from_cloud = T)
|
Arguments
occurence_file |
a path to a tsv (txt) file containing QSLIMFinder (SLIMFinder) occurence output |
main_file |
a path to a tsv (txt) file containing QSLIMFinder (SLIMFinder) main output |
one_from_cloud |
pick only one motif per motif cloud by the lowest p-value (before multiple hypothesis testing correction) |
Value
Genomic Ranges object containing QSLIMFinder (SLIMFinder) occurence output
Author(s)
Vitalii Kleshchevnikov
See Also
ELMdb2GRanges, GRangesINinteractionSubsetFASTA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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