Description Usage Arguments Value Author(s) See Also
Read QSLIMFinder (SLIMFinder) occurence output to Genomic Ranges object
1 2 3 | SLIMFinderOcc2GRanges(occurence_file = "../viral_project/SLIMFinder_Vidal/result/occurence.txt",
main_file = "../viral_project/SLIMFinder_Vidal/result/main_result.txt",
one_from_cloud = T)
|
occurence_file |
a path to a tsv (txt) file containing QSLIMFinder (SLIMFinder) occurence output |
main_file |
a path to a tsv (txt) file containing QSLIMFinder (SLIMFinder) main output |
one_from_cloud |
pick only one motif per motif cloud by the lowest p-value (before multiple hypothesis testing correction) |
Genomic Ranges object containing QSLIMFinder (SLIMFinder) occurence output
Vitalii Kleshchevnikov
ELMdb2GRanges
, GRangesINinteractionSubsetFASTA
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