recodeFASTA: Recode names of the AAStringSet object
In vitkl/SLIMFinderR: Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Recode names of the AAStringSet object
Usage
1
recodeFASTA(fasta, mapping = NULL, i = NULL)
Arguments
fasta
AAStringSet object for which to generate new names or the interactionSubsetFASTA which to rename back to the original names
mapping
data.table, mapping table between new and original names
i
which element of the interactionSubsetFASTA to rename back to the original names
Value
list of the original AAStringSet object with new names and mapping table between new and original names
interactionSubsetFASTA object with original names as provided by mapping table
Author(s)
Vitalii Kleshchevnikov
See Also
Examples
1
2
3
4
# from original to new
recoded.fasta = recodeFASTA(fasta)
# from new to original
subset_fasta = recodeFASTA(subset_fasta, recoded.fasta$names_mapping, i = 1)
vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Recode names of the AAStringSet object
Usage
1 | recodeFASTA(fasta, mapping = NULL, i = NULL)
|
Arguments
fasta |
AAStringSet object for which to generate new names or the interactionSubsetFASTA which to rename back to the original names |
mapping |
data.table, mapping table between new and original names |
i |
which element of the interactionSubsetFASTA to rename back to the original names |
Value
list of the original AAStringSet object with new names and mapping table between new and original names
interactionSubsetFASTA object with original names as provided by mapping table
Author(s)
Vitalii Kleshchevnikov
See Also
Examples
1 2 3 4 | # from original to new
recoded.fasta = recodeFASTA(fasta)
# from new to original
subset_fasta = recodeFASTA(subset_fasta, recoded.fasta$names_mapping, i = 1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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