README.md
In vitkl/SLIMFinderR: Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference
Installation
# Install R SLIMFinderR package
install.packages("BiocManager") # for installing BioConductor dependencies
BiocManager::install("vitkl/SLIMFinderR", dependencies = T)
SLiMFinderR::PPInetwork2SLIMFinder wraps the motif discovery pipeline.
Read the help page and the comments in code to find out the exact steps (https://github.com/vitkl/SLIMFinderR/blob/master/R/PPInetwork2SLIMFinder.R).
vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.
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Installation
# Install R SLIMFinderR package
install.packages("BiocManager") # for installing BioConductor dependencies
BiocManager::install("vitkl/SLIMFinderR", dependencies = T)
SLiMFinderR::PPInetwork2SLIMFinder wraps the motif discovery pipeline.
Read the help page and the comments in code to find out the exact steps (https://github.com/vitkl/SLIMFinderR/blob/master/R/PPInetwork2SLIMFinder.R).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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