filterInteractionSubsetFASTA_list: Filter InteractionSubsetFASTA_list by the size of the...
In vitkl/SLIMFinderR: Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Filter InteractionSubsetFASTA_list by the size of the interaction sets (number of proteins in each)
Usage
1
2
3
filterInteractionSubsetFASTA_list(interactionFASTA_list,
length_set1_min = 0, length_set2_min = 0, length_set1_max = Inf,
length_set2_max = Inf)
Arguments
interactionFASTA_list
object of class InteractionSubsetFASTA_list created by listInteractionSubsetFASTA
length_set1_min
mininal length of set 1, for example, if a set has less than 1 protein QSLIMFinder wouldn't work.
length_set2_min
mininal length of set 2
length_set1_max
maximal length of set 1, for example, QSLIMFinder has an upper limit of 500 sequences
length_set2_max
maximal length of set 2
Value
object of class InteractionSubsetFASTA_list containing: FASTA sequences for interacting proteins, molecular interaction data they correspond to. Each element of a list contains input for individual QSLIMFinder run.
Author(s)
Vitalii Kleshchevnikov
See Also
Examples
1
forSLIMFinder_Ready = filterInteractionSubsetFASTA_list(forSLIMFinder, length_set1_min = 3, length_set2_min = 1)
vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Filter InteractionSubsetFASTA_list by the size of the interaction sets (number of proteins in each)
Usage
1 2 3 | filterInteractionSubsetFASTA_list(interactionFASTA_list,
length_set1_min = 0, length_set2_min = 0, length_set1_max = Inf,
length_set2_max = Inf)
|
Arguments
interactionFASTA_list |
object of class InteractionSubsetFASTA_list created by |
length_set1_min |
mininal length of set 1, for example, if a set has less than 1 protein QSLIMFinder wouldn't work. |
length_set2_min |
mininal length of set 2 |
length_set1_max |
maximal length of set 1, for example, QSLIMFinder has an upper limit of 500 sequences |
length_set2_max |
maximal length of set 2 |
Value
object of class InteractionSubsetFASTA_list containing: FASTA sequences for interacting proteins, molecular interaction data they correspond to. Each element of a list contains input for individual QSLIMFinder run.
Author(s)
Vitalii Kleshchevnikov
See Also
Examples
1 | forSLIMFinder_Ready = filterInteractionSubsetFASTA_list(forSLIMFinder, length_set1_min = 3, length_set2_min = 1)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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