merge2GRangesmcols: Merge data.table to GRanges metadata

In vitkl/SLIMFinderR: Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference

Description

Merge data.table to GRanges metadata

Usage

merge2GRangesmcols(range, datatable, by.x = c("query", "interacts_with"),
  by.y = c("IDs_interactor_viral", "IDs_interactor_human"))

Arguments

range	a path to a tsv (txt) file containing QSLIMFinder (SLIMFinder) occurence output
datatable	a path to a tsv (txt) file containing QSLIMFinder (SLIMFinder) main output
one_from_cloud	pick only one motif per motif cloud by the lowest p-value (before multiple hypothesis testing correction)

Value

Genomic Ranges object containing QSLIMFinder (SLIMFinder) occurence output

Author(s)

Vitalii Kleshchevnikov

See Also

ELMdb2GRanges, SLIMFinderOcc2GRanges

vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.