singleInteractFromSet2: Filter interaction subset from 2 sets: keep only i-th element...

In vitkl/SLIMFinderR: Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference

Description

Filter interaction subset from 2 sets: keep only i-th element from the set2

Usage

singleInteractFromSet2(subset1, set1_only, i)

Arguments

subset1	interaction_subset_from_2_sets object produced by subset2setsBy1ID
set1_only	logical, only relevant if single_interact_from_set2 = TRUE, sequence set1 should contain only proteins that interact with an element of seed_id_vect in interaction_set1. If FALSE, proteins that interact with an element of seed_id_vect in interaction_set2 with the exception of the single one () are also included
i	which protein in the set2 inside subset1 to keep as a set2 element

Value

object of class interaction_subset_from_2_sets, the same as returned by subset2setsBy1ID, but set2 contains only one protein and (optionally) all other set2 proteins and corresponding interactions are removed

Author(s)

Vitalii Kleshchevnikov

See Also

subset2setsBy1ID, recodeFASTA, listInteractionSubsetFASTA

Examples

subset1_1 = singleInteractFromSet2(subset1, set1_only = set1_only, i = 1)

vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.