Description Usage Arguments Value Author(s) See Also Examples
Subset 2 sets of protein interaction data using a single ID and combine the results
1 | subset2setsBy1ID(interaction_set1, interaction_set2, seed_id)
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interaction_set1 |
cleanMItab object containing molecular interactions |
interaction_set2 |
different cleanMItab object containing molecular interactions |
seed_id |
interactor ID for which to retrieve interactions |
object of class interaction_subset_from_2_sets (list): name = seed_id,
combined_MITAB = combined interaction data for seed_id from interaction_set1 and interaction_set2
ids_all = IDs of all interactors of seed_id
ids_set1 = IDs of interactors of seed_id in interaction_set1
ids_set2 = IDs of interactors of seed_id in interaction_set1
length_set1, length_set2 - number of interactions in each set
description - short decription of the data
Vitalii Kleshchevnikov
1 2 3 4 5 | subset = subset2setsBy1ID(interaction_set1 = all_human_interaction,
interaction_set2 = all_viral_interaction,
seed_id = proteins_w_signif_domains[2])
# print the result
subset
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