subset2setsBy1ID: Subset 2 sets of protein interaction data using a single ID...

In vitkl/SLIMFinderR: Short Linear Motif Search Using QSLIMFinder, Protein Interaction Network and Binding Domain Inference

Description

Subset 2 sets of protein interaction data using a single ID and combine the results

Usage

subset2setsBy1ID(interaction_set1, interaction_set2, seed_id)

Arguments

interaction_set1	cleanMItab object containing molecular interactions
interaction_set2	different cleanMItab object containing molecular interactions
seed_id	interactor ID for which to retrieve interactions

Value

object of class interaction_subset_from_2_sets (list): name = seed_id,

combined_MITAB = combined interaction data for seed_id from interaction_set1 and interaction_set2

ids_all = IDs of all interactors of seed_id

ids_set1 = IDs of interactors of seed_id in interaction_set1

ids_set2 = IDs of interactors of seed_id in interaction_set1

length_set1, length_set2 - number of interactions in each set

description - short decription of the data

Author(s)

Vitalii Kleshchevnikov

See Also

interactionSubsetMapID

Examples

subset = subset2setsBy1ID(interaction_set1 = all_human_interaction,
                        interaction_set2 = all_viral_interaction,
                        seed_id = proteins_w_signif_domains[2])
# print the result
subset

vitkl/SLIMFinderR documentation built on May 3, 2019, 8:08 p.m.