Files in xieshu95/Test-Trasie
Dynamical Assembly of Islands by Speciation, Immigration and Extinction

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

R/.gitignore

R/DAISIE_ExpEIN.R R/DAISIE_ML1.R R/DAISIE_ML2.R R/DAISIE_ML3.R R/DAISIE_ML_CS.R R/DAISIE_ML_IW.R R/DAISIE_MW_ML.R R/DAISIE_PEI.R R/DAISIE_SR_ML_CS.R R/DAISIE_SR_loglik_CS.R R/DAISIE_SR_sim.R R/DAISIE_SR_sim_core.R R/DAISIE_area_params.R R/DAISIE_check_format.R R/DAISIE_compare.R R/DAISIE_create_island.R R/DAISIE_data.R R/DAISIE_dataprep.R R/DAISIE_extract_stt_median.R R/DAISIE_format_CS.R R/DAISIE_format_IW.R R/DAISIE_get_brts_mya.R R/DAISIE_loglik_CS.R R/DAISIE_loglik_CS_time.R R/DAISIE_loglik_IW.R R/DAISIE_loglik_IW0.R R/DAISIE_loglik_high_lambda.R R/DAISIE_make_archipelago.R R/DAISIE_plot_age_diversity.R R/DAISIE_plot_comparison_stts.R R/DAISIE_plot_island.R R/DAISIE_plot_params.R R/DAISIE_plot_pc_rates.R R/DAISIE_plot_sims.R R/DAISIE_plot_stt.R R/DAISIE_rates.R R/DAISIE_sample_event.R R/DAISIE_sim.R R/DAISIE_sim_core.R R/DAISIE_sim_core_1_4.R R/DAISIE_sim_core_checked.R R/DAISIE_sim_min_type2.R R/DAISIE_sim_update_state.R R/DAISIE_sim_with_mainland.R R/DAISIE_sim_with_ontogeny.R R/DAISIE_sumstats_rates.R R/DAISIE_tutorial.R R/DAISIE_utils.R R/ML_CS_table.R R/are_rates.R

R/ciclids_traits_depth2.csv

R/ciclids_tree.txt

R/create_rates.R R/create_test_simulation_output.R R/create_test_trait_state_params.R R/create_trait_state_params.R R/default_params_doc.R R/distribution_estimated_pars.R R/sim_with_estimated_pars.R README.md

TRASIE_balance1.png

TRASIE_balance2.png

Test-Trasie.Rproj

data/Biwa_datalist.RData

data/Galapagos_datalist.RData

data/Galapagos_datalist_2types.RData

data/Galapagos_datatable.RData

data/Macaronesia_datalist.RData

data/check_immig/immig_balance_notrans.RData

data/check_immig/immig_diffM_notrans.RData

data/check_immig/immig_diffM_notrans2.RData

data/check_immig/immig_diffrate_difftrans.RData

data/check_immig/immig_diffrate_notrans.RData

data/check_immig/immig_diffrate_sametrans.RData

data/islands_10reps_RAW.RData

data/islands_1type_1000reps.RData

data/islands_2types_1000reps.RData

data/pipeline_normal/pipeline_balance_short.RData

data/pipeline_normal/pipeline_balance_with_trans.RData

data/pipeline_normal/pipeline_diff_all_deleteNA.RData

data/pipeline_normal/pipeline_diff_immig.RData

data/pipeline_normal/simulation_results_same.RData

diff.png

man/.gitignore

plot/DAISIE_sample2.png

plot/TRASIE_balance_sample2.png

plot/TRASIE_check1_sample2.png

plot/TRASIE_check2_sample2.png

src/DAISIE_loglik_rhs_FORTRAN.f95

src/Makevars

src/R_init_DAISIE.c

tests/testthat.R

tests/testthat/.gitignore

vignettes/.gitignore

vignettes/demo_optimize.Rmd vignettes/demo_sim.Rmd vignettes/demo_trasie.Rmd vignettes/demo_trasie_CS.Rmd vignettes/demo_trasie_immig_IW.Rmd

vignettes/results_Value_1.jpg

xieshu95/Test-Trasie documentation built on Dec. 18, 2019, 7:34 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

xieshu95/Test-Trasie
Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Files in xieshu95/Test-Trasie
Dynamical Assembly of Islands by Speciation, Immigration and Extinction

R Package Documentation

Browse R Packages

We want your feedback!

xieshu95/Test-Trasie Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Files in xieshu95/Test-Trasie Dynamical Assembly of Islands by Speciation, Immigration and Extinction

R Package Documentation

Browse R Packages

We want your feedback!

xieshu95/Test-Trasie
Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Files in xieshu95/Test-Trasie
Dynamical Assembly of Islands by Speciation, Immigration and Extinction