ranges2names: ranges2names
In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Intersection of genomic ranges
Usage
1
ranges2names(rangesA, rangesB)
Arguments
rangesA
A GRanges object.
rangesB
A second GRanges object.
Details
This private (non-exported) function intersects two genomic ranges and
for each element of the first object returns the name of the elements of
the second object that it intersects with.
Value
A Rle character vector of same length as the rangesA
GRanges object, indicating one name or a semicolon-separated list of names from
the each rangesB object.
Author(s)
Charles Plessy
See Also
Other CAGEr annotation functions: annotateCTSS,
plotAnnot, ranges2annot,
ranges2genes
Examples
1
2
names(exampleZv9_annot) <- exampleZv9_annot$gene_name
CAGEr:::ranges2names(CTSScoordinatesGR(exampleCAGEexp), exampleZv9_annot)
CAGEr documentation built on Jan. 17, 2021, 2 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Intersection of genomic ranges
Usage
1 | ranges2names(rangesA, rangesB)
|
Arguments
rangesA |
A |
rangesB |
A second GRanges object. |
Details
This private (non-exported) function intersects two genomic ranges and for each element of the first object returns the name of the elements of the second object that it intersects with.
Value
A Rle character vector of same length as the rangesA
GRanges object, indicating one name or a semicolon-separated list of names from
the each rangesB object.
Author(s)
Charles Plessy
See Also
Other CAGEr annotation functions: annotateCTSS,
plotAnnot, ranges2annot,
ranges2genes
Examples
1 2 | names(exampleZv9_annot) <- exampleZv9_annot$gene_name
CAGEr:::ranges2names(CTSScoordinatesGR(exampleCAGEexp), exampleZv9_annot)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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