boundMolecules: Accessor methods for 'boundMolecules' slot in...
In ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Extract or Access boundMolecules slot in
parameterOptions object.
Usage
1
boundMolecules(object)
Arguments
object
object is a parameterOptions object.
Details
Defaut value: 1000
When computing occupancy (computeOccupancy), a value for the
number of bound Molecules to DNA is needed.
This value can be updated and set in a
parameterOptions object.
If the number of molecules is unknown,it is possible to infer this value with
computeOptimal.
We strongly encourage to set values when building a
parameterOptions object.
Value
Returns boundMolecules slot in
parameterOptions object.
Author(s)
Patrick C.N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84<e2><80><93>94.
Examples
1
2
3
4
# Building parameterOptions object
OPP <- parameterOptions()
#Checking single value by slot accessor
boundMolecules(OPP)
ChIPanalyser documentation built on Nov. 8, 2020, 8:23 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) References Examples
Description
Extract or Access boundMolecules slot in
parameterOptions object.
Usage
1 | boundMolecules(object)
|
Arguments
object |
|
Details
Defaut value: 1000
When computing occupancy (computeOccupancy), a value for the
number of bound Molecules to DNA is needed.
This value can be updated and set in a
parameterOptions object.
If the number of molecules is unknown,it is possible to infer this value with
computeOptimal.
We strongly encourage to set values when building a
parameterOptions object.
Value
Returns boundMolecules slot in
parameterOptions object.
Author(s)
Patrick C.N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84<e2><80><93>94.
Examples
1 2 3 4 | # Building parameterOptions object
OPP <- parameterOptions()
#Checking single value by slot accessor
boundMolecules(OPP)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.