boundMolecules: Accessor methods for 'boundMolecules' slot in...

Description Usage Arguments Details Value Author(s) References Examples

Description

Extract or Access boundMolecules slot in parameterOptions object.

Usage

1

Arguments

object

object is a parameterOptions object.

Details

Defaut value: 1000

When computing occupancy (computeOccupancy), a value for the number of bound Molecules to DNA is needed. This value can be updated and set in a parameterOptions object. If the number of molecules is unknown,it is possible to infer this value with computeOptimal. We strongly encourage to set values when building a parameterOptions object.

Value

Returns boundMolecules slot in parameterOptions object.

Author(s)

Patrick C.N. Martin <pm16057@essex.ac.uk>

References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84<e2><80><93>94.

Examples

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# Building parameterOptions object
OPP <- parameterOptions()
#Checking single value by slot accessor
boundMolecules(OPP)

ChIPanalyser documentation built on Nov. 8, 2020, 8:23 p.m.