Setter methods for
chipSd slot in a
When computing ChIP-seq like profiles (
the occupancy values given by
computeOccupancy are transformed into
ChIP-seq like profiles.
The average size of a ChIP-seq peak was described by Kaplan
(Kaplan et al. , 2011). The average peak size is subject to
variation. This variation is accounted for with
It is advised to use the standard deviation
of ChIP peak width from actual ChIP-seq data.
We strongly encourage to set values when building a
parameterOptions object with an updated
Patrick C.N. Martin <firstname.lastname@example.org>
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84<e2><80><93>94.
Kaplan T.,Li X.-Y.,Sabo P.J.,Thomas S.,Stamatoyannopoulos J.A., Biggin M.D., Eisen M.B. Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development, PLoS Genet.,2011, vol. 7 pg. e1001290
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