Calculate NB-statistics quantifying differential expression for each gene
Calculate NB-statistics quantifying differential expression between two groups of samples compared.
The results will be used for GSEA run. Comparing with
DENBTest, this function will not
calculate NB test p-values.
This function only works with two-group comparison.
A CountDataSet object with size factors and dispersion parameters estimated. Recommended to take the output of
A data frame containing each gene's expression means and variances in each group, and each gene's DE NB-statistics.
The results with the output of
DENBStatPermut4GSEA can also be used to run
Xi Wang, email@example.com
Xi Wang and Murray J. Cairns (2013). Gene Set Enrichment Analysis of RNA-Seq Data: Integrating Differential Expression and Splicing. BMC Bioinformatics, 14(Suppl 5):S16.
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