getGeneCount: Calculate read counts of genes from a ReadCountSet object
In SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Calculate read counts of genes from a ReadCountSet object
Usage
1
getGeneCount(RCS)
Arguments
RCS
a ReadCountSet object
Details
This function can be used to get gene read counts from exon read counts.
Value
a matrix of gene read counts for each gene (row) and each sample (col).
Author(s)
Xi Wang, xi.wang@newcastle.edu.au
See Also
Examples
1
2
data(RCS_example, package="SeqGSEA")
geneCounts <- getGeneCount(RCS_example)
SeqGSEA documentation built on Nov. 8, 2020, 5:46 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Calculate read counts of genes from a ReadCountSet object
Usage
1 | getGeneCount(RCS)
|
Arguments
RCS |
a ReadCountSet object |
Details
This function can be used to get gene read counts from exon read counts.
Value
a matrix of gene read counts for each gene (row) and each sample (col).
Author(s)
Xi Wang, xi.wang@newcastle.edu.au
See Also
Examples
1 2 | data(RCS_example, package="SeqGSEA")
geneCounts <- getGeneCount(RCS_example)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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