calES: Calculate running enrichment scores of gene sets

In SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

Description

This is an internal function to calculate running enrichment scores of each gene set in the SeqGeneSet object specified

Usage

calES(gene.set, gene.score, weighted.type = 1)

Arguments

gene.set	a SeqGeneSet object.
gene.score	a vector of gene scores corresponding to the geneList slot of gene.set.
weighted.type	gene score weight type.

Author(s)

Xi Wang, [e-mail]

See Also

GSEnrichAnalyze, calES.perm,

Examples

data(DEscore, package="SeqGSEA")
data(DSscore, package="SeqGSEA")
gene.score <- geneScore(DEscore, DSscore, method="linear", DEweight = 0.3)
data(GS_example, package="SeqGSEA")
rES <- calES(GS_example, gene.score)
rES[1,]

SeqGSEA documentation built on Nov. 8, 2020, 5:46 p.m.