geneTestability: Check gene testability

Description Usage Arguments Details Value Note Author(s) See Also Examples

View source: R/DSscore.R

Description

This function is to determine each gene's testability. A gene is testable if at least one of its exons are testable.

Usage

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Arguments

RCS

a ReadCountSet object after exon testability checked, usually the output of exonTestability.

Details

This result can applied to filter out genes not expressed.

Value

A logical vector indicating which genes are testable, i.e., having at least one exon testable.

Note

Please run exonTestability before run this function.

Author(s)

Xi Wang, [email protected]

See Also

exonTestability, subsetByGenes

Examples

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data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
geneTestable <- geneTestability(RCS_example)
head(geneTestable)

SeqGSEA documentation built on Nov. 17, 2017, 9:49 a.m.