SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

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geneList: Get the gene list in a SeqGeneSet object

geneList: Get the gene list in a SeqGeneSet object
In SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/Allclasses.R

Description

Get the gene list in a SeqGeneSet object

Usage

1
geneList(GS)

Arguments

GS

A SeqGeneSet object.

Details

TBA

Value

A vector of gene IDs.

Author(s)

Xi Wang, xi.wang@newcastle.edu.au

See Also

loadGenesets, SeqGeneSet-class

Examples

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##
gs <- newGeneSets(GS=list(1:10, 6:15, 11:20),
                  geneList=paste("Gene", 1:22, sep=""), 
                  GSNames=c("gs1","gs2","gs3"), 
                  GSDescs=c("test1","test2","test3"), 
                  name="gs examples")
geneList(gs)
## End

SeqGSEA documentation built on Nov. 8, 2020, 5:46 p.m.

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Package overview Gene set enrichment analysis of RNA-Seq data with the SeqGSEA package

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