SeqGSEA-package: SeqGSEA: a Bioconductor package for gene set enrichment analysis of RNA-Seq data

Description

SeqGSEA is an R package for gene set enrichment analysis of RNA-Seq data with the ability to integrate differential expression and differential splice in functional analysis.

Details

Package: SeqGSEA
Type: Package
License: GPL (>= 3)

A User's Guide is available as well as the usual help page documentation for each of the individual functions.

The most useful functions are listed below:

* ReadCountSet class

* SeqGeneSet class

* Load data

* DE analysis

* DS analysis

* GSEA main

* Result tables

* Result displays

* Miscellaneous

Author(s)

Xi Wang and Murray J. Cairns

Maintainer: Xi Wang <xi.wang@newcastle.edu.au>

References

Xi Wang and Murray J. Cairns (2013). Gene Set Enrichment Analysis of RNA-Seq Data: Integrating Differential Expression and Splicing. BMC Bioinformatics, 14(Suppl 5):S16.


Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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