SeqGSEA-package: SeqGSEA: a Bioconductor package for gene set enrichment...

Description Details Author(s) References


SeqGSEA is an R package for gene set enrichment analysis of RNA-Seq data with the ability to integrate differential expression and differential splice in functional analysis.


Package: SeqGSEA
Type: Package
License: GPL (>= 3)

A User's Guide is available as well as the usual help page documentation for each of the individual functions.

The most useful functions are listed below:

* ReadCountSet class

* SeqGeneSet class

* Load data

* DE analysis

* DS analysis

* GSEA main

* Result tables

* Result displays

* Miscellaneous


Xi Wang and Murray J. Cairns

Maintainer: Xi Wang <[email protected]>


Xi Wang and Murray J. Cairns (2013). Gene Set Enrichment Analysis of RNA-Seq Data: Integrating Differential Expression and Splicing. BMC Bioinformatics, 14(Suppl 5):S16.

SeqGSEA documentation built on May 31, 2017, 3:19 p.m.