DSpermutePval: Permutation for p-values in differential splicing analysis

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/DSscore.R

Description

Calculate permutation p-values in differential splicing analysis.

Usage

1
DSpermutePval(RCS, permuteMat)

Arguments

RCS

a ReadCountSet object after running estiExonNBstat and estiGeneNBstat.

permuteMat

a permutation matrix generated by genpermuteMat.

Details

Permutation p-values are computed based on NB-statistics for comparison of the studied groups and NB-statistics from the permutation data sets.

Value

A ReadCountSet object with slots permute_NBstat_exon, permute_NBstat_gene, featureData, and featureData_gene updated.

Author(s)

Xi Wang, [email protected]

References

Xi Wang and Murray J. Cairns (2013). Gene Set Enrichment Analysis of RNA-Seq Data: Integrating Differential Expression and Splicing. BMC Bioinformatics, 14(Suppl 5):S16.

See Also

estiExonNBstat, estiGeneNBstat, genpermuteMat, DSpermute4GSEA

Examples

1
2
3
4
5
6
7
8

SeqGSEA documentation built on May 31, 2017, 3:19 p.m.