Calculate NB-statistics quantifying differential expression for each gene in the permutation data sets. The results will be used for GSEA run.
a CountDataSet object, can be the output of
a permutation matrix generated by
A matrix of NB-statistics. Each row corresponds to each gene, and each column to each permutation.
The results with the output of
DENBStat4GSEA can also be used to run
Xi Wang, [email protected]
Xi Wang and Murray J. Cairns (2013). Gene Set Enrichment Analysis of RNA-Seq Data: Integrating Differential Expression and Splicing. BMC Bioinformatics, 14(Suppl 5):S16.
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