estiExonNBstat: Calculate NB-statistics quantifying differential splicing for...
In SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

Description Usage Arguments Value Note Author(s) References See Also Examples

Calculate NB-statistics quantifying differential splicing for individual exons between two groups of samples compared.

1	estiExonNBstat(RCS)

RCS

a ReadCountSet object after running exonTestability.

A ReadCountSet object with the slot featureData updated.

Please run exonTestability before you run this function.

Xi Wang, xi.wang@newcastle.edu.au

Weichen Wang, Zhiyi Qin, Zhixing Feng, Xi Wang and Xuegong Zhang (2013). Identifying differentially spliced genes from two groups of RNA-seq samples. Gene, 518(1):164-170.

exonTestability, estiGeneNBstat

data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
RCS_example <- estiExonNBstat(RCS_example)
head(fData(RCS_example))